Scaffold Ga0114969_10304125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114969_10304125

Scaffold Ga0114969_10304125

Overview

Basic Information
Taxon OID	3300009181 Open in IMG/M
Scaffold ID	Ga0114969_10304125 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	940
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041193	Metagenome	160	N
F052596	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114969_103041251	F052596	N/A	IIDLQIAHNKRSDELYALKIDLLETFDEITRANDLLWAEVLTENGDYHLCYYLYEMNGMYGTPDLNEEYKDIKELYDYLIENKGFK*
Ga0114969_103041253	F041193	N/A	LTAYSQSLIINNKDTLICFSSDKAKFLAKQYHKAEAYYLSDSLCQQQLIFKANQVNLYKKNEDKLQTIIGNQVTIIKYKDEENKSLTIQMKGLNLEVKKQKRLKGISIIFGVSCLVFTLVK*

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