Scaffold Ga0114959

Basic Information
Taxon OID	3300009182 Open in IMG/M
Scaffold ID	Ga0114959_10000409 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009182 Open in IMG/M

Scaffold ID

Ga0114959_10000409 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40618
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (75.76%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

40618

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (75.76%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114959_100004093	F000857	GGA	MKMDDEEVKVNEKYYSEGILESGIEGVLRKNDKLFNEVKSKNWSQSFNTENINYKVGAVDGERYVQYEQKNVEEVRQFCKERREFHKIHGTDNPFFAGTAHMMQLPKCFAHEISSKWFGNRPWELIKMDKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0114959_1000040956	F012670	AGAAGG	MLDEIRPEGKTVSTEKQKEYARAYSAKKRAEKRAQKLATGQALPKEPKPASHSPGRPKSVVNRVTEYGALFNKLNDEHIAKGFPPLKTAMEVLIEAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVQNINKEEEVTADDALEDFMESLRKV*
Ga0114959_1000040961	F001059	AGGA	MATYDIESLKEDLPTAKELAQFVYDKTNISLDLIGKPKADQYLAAKNALEGKKIPAEYISDVNPYVDKKELIPQDELPPLPERPKDLPGIDSRIHFFGATNMPHPLDPQSDRKVQIDFYKYDNGAITYQINGPVEQIAIGERINKYGVKQPERYGWIDPRTEEILLKRPDGTFTEKGRGIYAYCIGEKGGGIWPLIDRNFLAHIEKNVTNPWA*
Ga0114959_1000040962	F006264	N/A	MEDYAVLFRQKLSGQAEVCARKTLETLQKDLQGAKALSPEDIYYLTSAAQILLTMRDYYGKE*
Ga0114959_1000040964	F004695	AGGA	MLDKQNLIVPYIEAPAGNKGIEFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEQDTDQSNQATEMVKYMLNSRNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVTGTKDQLRVFETMAGEKGLTAKRQEMKLADVDLQGAIEQAAANGAPTSEDLTDALNKNKVYKAKYKLTGYSTTVRVKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDNDGEEEIIEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPSKHIYEFGAMQGNLAYVQSSMQRFESDKMAIIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLVQYSDDYNIQQLAGVCAQGKPFMDAISIQNFEFIDRRMINIDMALGFLSDENRLTRQQLIVQAQGAFTQAMMQIDPSVPELFIKARKPYEDTLRVLGVKDVDSYLPTMEEAAKIAQAKSQQPPSPEQQEISSKVAVNTAKTEEIAANTAFTKRKTQDMDTDDYFESLAAKRGKLSAQEVD*
Ga0114959_1000040965	F003521	AGGA	MKSLVLNIRSYFNKRTKIKDSRKEADATRRTLVIENGEKANRLMANEDFALMFNLYRFQMLERLEDSRDDNERITNAHYVAGVRDFIYFVEQQEYLGKVAVTPNLKEMS*
Ga0114959_100004098	F012214	AGGA	MADYTRLRTPFVNMSFTPDVPSNALGPNEYNSGRNVEADVRGIKKIGGEQAILSAIPGNVVFVDGGFRGTSTWTFIAATREGKWYAITSGGITNITPGVGANPNVSLSGYSDNINITTSWVGNVFFINDTLRNPMYFLSTATEISITPDSQWNYTPGSNATRAAFVRNYSSPNVGNILIAGNITQDLSTGITANYPTTVRWSQAFANTGIPGTWVPTLSNVANEVEVPVRGPLVDGFFLGANFYVCSYWDTVIFSPISYTNSTAPVFGIRLFNQGRGLINNNCWTNTDQYVYGVDSRDIWVFDGSSFNPLGNQKVRDYFFANLSQTYSDRIFVVNNTQKNQVEVYYPDLNSTGWCNKMLAWRYDIQVWNAPKDIVNATDACEAPKYVDSDFQFASRTIVYAQGSTSSSQLIQTNIGNSFINNTAIPTLFERTNINLQTDKGPVPYSSKVYIHRVLPEIAGTGKINITVGGANSTAQTPVYGQTGQTNIVTDNPWVTTQQNNVRTVSVKVASNDATDTWNLTALNWQANIVEDAF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114959_10000409

Overview

Ecosystem & Geography

Associated Families

Sequences