NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114959_10132350

Scaffold Ga0114959_10132350


Overview

Basic Information
Taxon OID3300009182 Open in IMG/M
Scaffold IDGa0114959_10132350 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009320Metagenome / Metatranscriptome319Y
F016785Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0114959_101323501F009320N/AQSVREVFEDNYGLNCIAGAILNPVNDMGKVTNHKSYGINIMRMGMERGTFMINEACVDFLDEARNYAIDDAGKFSDPDDHIDSARIGILALIQGHGESLVSRANTFEFRRLTAVEGKAQRI*
Ga0114959_101323502F016785AGGAMLDKQNIVVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQSAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPEEDQTQQEGMDSAIRANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTIPNIQDQDFVGFYDPMTIHECKSQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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