Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10000149 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10000149 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60601
Total Scaffold Genes	124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	85 (68.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

60601

Total Scaffold Genes

124 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

85 (68.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F022885	Metagenome / Metatranscriptome	212	Y
F023846	Metagenome / Metatranscriptome	208	N
F029757	Metagenome	187	N
F031096	Metagenome / Metatranscriptome	183	Y
F040104	Metagenome / Metatranscriptome	162	Y
F047683	Metagenome	149	N
F077219	Metagenome	117	N
F078720	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_10000149105	F047683	AGGA	MTLTVEQIETTFAAPAEGLADSYYPVLAYWIPIEKLEEVRAAYRATDTTIRIRYRGPRTVSVGREMSRPDKTTYTRSYHRAMQDCLIADATHFTVYDYTAR*
Ga0114974_10000149106	F029757	N/A	MYIISKTGYPGYMMMKGNIDMLTLSDINVLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQIEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEGEFDFYGLEILEYRFELKFGSISRWLSE*
Ga0114974_1000014912	F004477	AGG	MSLTSFFSSPPITSFEQLELEKGKIQLTIMKMVTLVLSSIMLAVVGIFLIGLFLPNHVIDNNEIFKIIGPAFSMIIGAFVGAFATMMGMKTAEFDPNVKTQELGKTDHKQLAEAHVINAQAETIETENEIKMMAAIDKYKDSDEDFGPF*
Ga0114974_10000149122	F077219	N/A	MTELLEKLKTVFSVTEPGLVIDKDFLQLREDMKARLNQGTRNDFKFTKDVDCLVLEEWLIKKNIVLGPRPEHCEKSGACVYDVRVDDAYIDFKCIDENLYYNVSEQKLQTHPWVQEGIDAGRLTHYCFYRMHRPEDRPLRENDVVTFELINVLNSQYVVDSLMPSKFDGKFYKVPKYV*
Ga0114974_1000014918	F023846	AGGA	MSDRAKKITELTSIGTANTSIASGDIFIVEDISANTTVSATLSTLRKAIVQGPYANNTAANTGGVALGQLYYTAAGDVKVRIA*
Ga0114974_1000014933	F040104	AGGA	MSSGYTIELDWETVDHVVVGQLRNTWEALKGNLGNGDWVFVWGDQEADDAEIQKRIDALELLLAWYSTPDELVEMGLKEGA*
Ga0114974_1000014940	F031096	AGGTGG	MMKDTNMVTNLSGGAFELRTGRKWTWGISPFREKETLKLRWEKVGPIGGRHFFEIDGVQYSAKQISPHLKDIQMHTEGF*
Ga0114974_100001495	F022885	AGGA	MTELVDNEYGIEYEQIPIKKLRIFRVGKQWLVEYQRYVRLWAPWDHFWWYNDGQYVEYYDALARVNELKANGYANVPRFMKVKTFEVEQ*
Ga0114974_1000014972	F078720	N/A	MDNKKIVAGVAGIAVVGILSYFGYRLVKEFNELDIDFFGENIEDSYHQRYPTKNGNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10000149

Overview

Ecosystem & Geography

Associated Families

Sequences