Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10000332 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10000332 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40201
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (67.19%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

40201

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (67.19%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F005087	Metagenome / Metatranscriptome	412	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000033249	F001915	AGG	MEREWQLAHPLHDVDDIVEMADSVFGKEADGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRTKPEHKKIVVDGFLDHELIESKLLGYCWFDRGGYTTYANEEISNAKFHHLDLSLPARQRVKLIHEMIDQHILWASTWGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWIRTENGLKGLHEKA*
Ga0114974_1000033250	F012670	AGG	MKKPKDADLLFGEIRPEGSLVTSPEELEKKKHFMKMKRLEKRAMGLATGEKFPKEEKKPIGRQKSIVNRVTEYGALFNKLNEERLAKGLPPLKTAMEVLIDAMQSEEIDIKDKARIADKLAPFESSRAPIISIEHVNNVNKEEEVSADDALDDFLTALRKV*
Ga0114974_1000033252	F099270	AGG	MSTNFLYAQAPNRKGNMSKQPPSKSGGATNVTNTKHGVSGPTGQQGAPKAGGDITGRHQKVQVSTHADYCGTIKNDGYMNKSVKNYLG*
Ga0114974_1000033253	F040590	N/A	MSYGKVISGGARMTNGLTKNINGKLKSFEEGHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTVPKLPTNV*
Ga0114974_1000033254	F001059	AGG	MATYDIEALKEDLPTAKDLAQFVYDKVGISLDLVGKPKEEQYLVARNALEGKKIPADFQTDLNPYIDRKELIPVDEKMQLPPRPADLPDPGSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQVAVGERINKFGQKQPEKFSWIDPRTEEILLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNVMNIAEKNVTNPWA*
Ga0114974_1000033255	F006264	N/A	MDDHSTTFRLKLSSQAETCARKTLEWLQKDLQGDRELAPQDVYYLASAADLLLTMRDVYGKK*
Ga0114974_1000033261	F000857	N/A	MEKAMTEDDDIKVNEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTDNIDYKVGAVNGNRYVQYEQKNVENVKEFCKQQREFYKIHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQEKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTK*
Ga0114974_1000033262	F005087	AGGA	MALFIQSANTLVSRIANWVGAIPSSVGINATAYNTTTKVITCSANPTSVVSVGDFIGFSVMGPYALAVSVTSTTITVNDPEGIWDDAVVPTAIIKVPTQSTIEITQSIQMAELKMRTIELPALRSNPYDDVEPAHLITDAKGMAPIPADMCFPILFFQESQPSNQEYEGTNLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVIIKAYYQRVFPFLFSSTADVEYPVVQSNAILASFPEGYFYGTLWAYYDKNKNTEEAQKWLSRFDDSYGLIEDQNYKGKWRGGDQHLTSEFQPRTYRYSFK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10000332

Overview

Ecosystem & Geography

Associated Families

Sequences