Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10000534 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10000534 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31845
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (75.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

31845

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (75.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F013252	Metagenome	273	Y
F016247	Metagenome	248	Y
F017424	Metagenome / Metatranscriptome	241	Y
F035623	Metagenome	171	Y
F037052	Metagenome	168	Y
F043202	Metagenome	156	Y
F051683	Metagenome	143	Y
F053035	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000053413	F051683	AGGA	MILEIEDDFTDEIVVASLAQSYVSVSENVKNINNWHEDDIAAWKELLPALETVLKWYSTDFKAEIKKAKKKK*
Ga0114974_1000053415	F016247	AGAAGG	MTTFIVEHRIKGNYVMETIAGVEDIDTSMYKDLLGIWVCDSTEEARVMEKELQEMRHARSRQQP*
Ga0114974_1000053419	F043202	N/A	VDTGHFGIPIKVCFSDAAFQQAVRDSKITTRHNALDIGLAESHFIEQEGTQAAMLAIVFNYEEMLKETSLDRMGVIYHEVSHTVTHVFDYIGEEETKIGDESRSYLGEHIFKQVFAIYATEEDKRERAGERNRKLSNKTNKAVIGALVQMAEQRNGGAGSDSDSESKDSIRGTEDGNG*
Ga0114974_100005344	F012096	GAGG	MSTWLIAAMGFVYFIVACDQFWKGGVGTGIMFLGYAIGNIGLVLVAK*
Ga0114974_1000053456	F035623	N/A	MNEYVYQIQGALENAQGQFKGLRILVCDAHNIDMVDAPVEILDNETIRFLQFRLSITKETMNIQNLPVVVQYKIRAPLGRWLDRWVLENFHGDISKRKSINT*
Ga0114974_100005346	F037052	AGGTGG	VAAKKTLSKYNPEMCAQMIALGQEGASQKMMWSKLGISKATAETYKKNHPEFAEALDMALVHSQAYWETQLLANLDNKNFNSRLAEIALRGQFQTDYRETRDTKIDLKAEVKIDFNKEISDLISALKA*
Ga0114974_1000053460	F013252	AGGAG	MADNNLQGFRQTYQETGKLSSGGGPEDKKLDAGPSGSKRPNNAVKGKPARSSKVGPDKNLKDIGGGNFY*
Ga0114974_1000053461	F017424	N/A	MNDFISEIIGRVKTERSNLADNVTAGMNVNTFEDYQRLVGRYEGFTIVLDIIESILTEDDEEV*
Ga0114974_100005349	F053035	AGGA	MMNPFELRFSIFNTAKDLMVKQHEANLAAWELLNKTSKEAAELAPSFPTTEEIIDKAIEINTFISGTTTKELAGIAKKMAGVSVIF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10000534

Overview

Ecosystem & Geography

Associated Families

Sequences