Scaffold Ga0114974

Basic Information
Taxon OID	3300009183 Open in IMG/M
Scaffold ID	Ga0114974_10000641 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009183 Open in IMG/M

Scaffold ID

Ga0114974_10000641 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28770
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (73.68%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

28770

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (73.68%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012096	Metagenome	283	Y
F013252	Metagenome	273	Y
F015062	Metagenome	257	Y
F016247	Metagenome	248	Y
F017424	Metagenome / Metatranscriptome	241	Y
F018653	Metagenome	234	Y
F037052	Metagenome	168	Y
F051683	Metagenome	143	Y
F053035	Metagenome / Metatranscriptome	141	Y
F055446	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000064113	F051683	GAG	MILELEDDFTDDITVVNLAESYVSVSKMLKDGDSWHEDDVASWKELLPAIKLVGGWYSVDFDKEIKKAKKKK*
Ga0114974_1000064116	F016247	AGGA	MSTFIVEHRIKGNYVMETIAGVEDIDMSMYKDLIGVWVCESVEETRAMEKELQEMRHARSSQPS*
Ga0114974_1000064117	F015062	N/A	MKLKTKTKHKVCAVAPRLSDEDIDPIEQDDMDTVSSQIVEGWLPWDPEDIIDIKRLINEKMPQKQQFVVEAFLDGLNYVDVGVTEKYWRYHFSKGVEFIKKELQL*
Ga0114974_1000064120	F055446	GAG	MVKKKKNYNYYKLNVGFFPDVVKLCFDDKVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVHETRAYLSGHLAGQIFKICMHEKEKYARKANRKIPNKTSKRDGGADVQVDQLSVGSAGPNSVSEQSVSLSGTQDANRSTVTQTNPSV*
Ga0114974_1000064133	F018653	GAG	VSQYRYILIDEFGGACRKFASKLEAQPYLTAGMRLEALPKTPKQNPYIIASLQLPEALL*
Ga0114974_100006414	F012096	AGGAGG	MSTWLIAAMGVVYFIVACDQFYKGGVGTGIMFLGYAMGNVGLVMVAK*
Ga0114974_1000064153	F013252	GAG	MADNNLQGFRQTYQETGKLSSGGGPEDKKLDAGPSGSKRPNNAVKGKPARSSKVGPGKNLKDIGGGNFY*
Ga0114974_1000064154	F017424	N/A	MRDFISEIITRTRDEQTKLADTLTAGNNVNTFEDYQRLVGRYEGFKQTLDIINEILREDEEDL*
Ga0114974_100006416	F037052	AGGTGG	VATKKLVPKFEPAMCDQMIAMGKEGASQKMMWSQLGISKTTAETWKKKYPDFGEALEIALVHAQSYWETQLLANVENKNFNSRLVEIALRGQFQQDYRETRETKIDLKAEIKVDYQKEINELLAALKT*
Ga0114974_100006419	F053035	AGGA	MMNPFELRFSIFNTAKDLMVKQHEANLAAWEVINKTSKEAADLAPKFPTTEEIIDKAIEINTFISGQTTKELATVAKKLAGVSVIF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114974_10000641

Overview

Ecosystem & Geography

Associated Families

Sequences