NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114974_10004778

Scaffold Ga0114974_10004778


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10004778 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10124
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014135Metagenome / Metatranscriptome265Y
F020690Metagenome / Metatranscriptome222N
F054041Metagenome / Metatranscriptome140Y
F074411Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1000477811F074411GGAGMFKGNQMQTSIKLTEKQVALLLQILDEQISVGNIDPSDKALASEVLDILETAENKITSLY
Ga0114974_1000477813F014135AGGMGKGLEIDFDTADRFTLLNLIDQRKYLKKALKEHKKGKYLHPEDVVRNAEIIAALELLIPYYGGTND*
Ga0114974_1000477827F020690AGGAGMIKDTDKMVTKGVYMSLSAIYTHTKTAKVIALMIQRSLPEFRKQLNLPRDVKFRIAPIKAKNTNGYYEVENNMATIECRLGWAKALEVIAHELVHAEQYHTGKLKKKYVQRKGWLHSWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCRILEEKYP*
Ga0114974_100047789F054041GAGGMTTIFTCGHKANDDDNGWTISTRAYTRENNRAVDYRTVCNNCYYVYDSEDLILYNDDAVEKWLKGE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.