NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10036544

Scaffold Ga0114974_10036544


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10036544 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3362
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011484Metagenome290Y
F038999Metagenome164Y
F055552Metagenome138Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1003654412F038999AGGCGGMNAAIVYPCTCNGCRNYPTRPAEIWHESQIASKAQGYYFSSDTMKFFNSRIADFKPVGISPRADSLMVIVSSKRGDDARDYEIVTLCPYGELGREWIKDSDGAPIEHYSSLKAARRSARWNCTIAPQVCDCHGCNLDKAGR*
Ga0114974_100365442F055552GAGGMNKEYWEMKLDLCRKIGIEQLMAGDIKNGNRNLKRMVRAMEELNLIKANEGEDKSAADMWASLIASGVMLAGEGKSNGQQG*
Ga0114974_100365447F011484GAGGMKELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLKLPQVMRGRE*
Ga0114974_100365449F093483GAGMTIERVRHSGAIVVSALVEWEGVKWLESATYYGYTIKAAKASGRDSGKRLNYTIERG*
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