NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10046636

Scaffold Ga0114974_10046636


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10046636 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2920
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029418Metagenome188Y
F031359Metagenome182Y
F034908Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_1004663611F034908AGGAGMAKFSVVIEVSMDDTYLKQVETWGVEPSDHVATILSETAREKGLVVKTSVLEVEHSLFDRQRKHADHLVQADAYNDLEEEIISRACVGGVCED*
Ga0114974_100466367F031359AGGAMTTKKEKQYIVEQVVVTGYVIHGNGRKTPFSFNKNDLKPNDLLGIFDGVRRIFK*
Ga0114974_100466369F029418GAGMMTPDEKKQKFEEDLIQVAVAEYYAYVDDCNAKNPLSRVRSEKDSRMFYYAMRMGVLRGINFATNQYMQSLKNFEEKKNETEHKYQDETK*
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