NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10078884

Scaffold Ga0114974_10078884


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10078884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2148
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_100788842F014140N/AMNTYKVKMDVELEVTAFNETDARDYVGDIFNIDDEIKKVNIVKITEKK*
Ga0114974_100788844F012975GGAGVLNLTLKGVEVFIQRSKTKSQESYWDNYDLLIWKQNPGGFTSIKGMFRKDSWGITERIPVNEQGIWKLPSKYVKHFK*
Ga0114974_100788846F000473AGGMEFINKDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIREIKKPDMGLQMDIVKYPDFLTIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN*
Ga0114974_100788848F000671GAGGMEKILCYCCNKTKNKLNVRKSILIPINLLMCETCITSKFEPRWVVILAGRQLGSDSVKEFIIKKRYCGNDIAASEL
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Institute for Fundamental Biomedical Research
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