NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114974_10177029

Scaffold Ga0114974_10177029


Overview

Basic Information
Taxon OID3300009183 Open in IMG/M
Scaffold IDGa0114974_10177029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1317
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F037730Metagenome167Y
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0114974_101770291F013413N/ARGIFAIELRLANDGRGFGLVNGCRRSYSATTVVYHVQNIKPNRKEKTMTENEYDETFDMQMEKEHQLNLDRMRQFKLIGEQISKMPDASPKVLEIEVRYLMGIISELEARVKDLESEVRRLENWISRG*
Ga0114974_101770292F014620GGAVDNQLQMFAPTIGLGGTFERPAINRDIVIIAREAKQTSVDAALKMKPKTGKKRARVHAYLLGRPATDEEIETALNMSGNTVRPTRGSLVKDGHVIDSGVRRLTRAGNEAIVWRCV*
Ga0114974_101770293F055728GGCGGMRRSYDPHYGSREQLRAQSEHGMKVARERDALKAENAELQKQITELKAIIAYMTEGE*
Ga0114974_101770294F037730GAGMKEFNETQSTNEYLIGELVIARKRNEVLTEHIATLVKHIETLAEDLKVSSQLLDACVAYMS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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