Scaffold Ga0114976

Basic Information
Taxon OID	3300009184 Open in IMG/M
Scaffold ID	Ga0114976_10003051 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009184 Open in IMG/M

Scaffold ID

Ga0114976_10003051 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10480
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10480

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002149	Metagenome / Metatranscriptome	589	Y
F009734	Metagenome / Metatranscriptome	313	Y
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114976_100030511	F009734	N/A	ISIISNNIGCVAGASAIQVNSDIFFLSDDGIRSLIRSASDDFTSVGLPISEVVKDVIQEINTAQIGISTAAYYDNRYLLAVPTASNNFNDTILVYNTILGAFEGTWTPKVMQFALTNFQSEGLRLMMKLTTGQINKYSGYKTPAQTTSADYVDFGIQSNGTSVGTFDFSSSVRTRDMDFGDPFAQKHGSNFEIIFDDSYSNNATIAIQRDSDVGDVEVQPNLNIASTVLVLPFVLPAVLPTSVKKRIASDLRKYEKWRLINISVTSEANKMAVRQITAAANPDTIEVQKTI*
Ga0114976_100030512	F002149	GAGG	MTAVEYIEESGVPESMWPNLVDWYGWFEKQGMVGVVKDGEEIAGVALARCLKDGQEPKHYEHTEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYCYMTFMRKARV*
Ga0114976_100030515	F025460	AGGAG	MAVIDVPELMNMFRQGDIDKQAAAEAQRKQALEERAMALKEQPDVDFTFEKGGLKVKGKLKDLPTLSQDPAFAPYLSGIGQTITNEQSLQNEDIETQRAELSDRLKELQKKRVKQEIEIAKGDRRTFAMEAGLGLIGAKPRADVLRDIEAEAGVYKGKMAELGFNRQAGQMETNVPDYQSPTMPLQAPAQVAPETPAQTPAQPEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ*
Ga0114976_100030518	F030376	GAG	MKAIITITLMAMLMASGMADDDDADAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDATFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114976_10003051

Overview

Ecosystem & Geography

Associated Families

Sequences