NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114971_10038689

Scaffold Ga0114971_10038689


Overview

Basic Information
Taxon OID3300009185 Open in IMG/M
Scaffold IDGa0114971_10038689 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3030
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051919Metagenome143N
F065438Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0114971_100386891F051919N/AMSNENVIYNPYYGDNLCNLLANSIVEKIKSVDPKLYVNISVTNVNSFFMTCGETEYTEPLDITEIFNSVMENVPEPLKLIVKVFDLISYNTKRVPNTILYSEQFSKYKKTLSENFTKYSEILKLNKKECYTNIKCFNTDVYIESISNINEVKLPKGYIDWKPNTKVFKSSSIFGKDLYSEKYIYMLFRYIAHTLFEAGLCNIVKLSVNTNNPVDQLYWDNVNFEIDSEYFLASQKWTKS
Ga0114971_100386892F065438N/AMDIGQLIIDGNTDELQTIIKRYFNNDYELFFQYVIDEGYIEMTDSIDNSIYDLYPKNIIKYWMNKDPEKTIDYIIDRHLSDVKKENGKYYMELSDLSDLKFLFRSESKYYVEGILSNDINTYDYNFSDFGMKVSDLINDLDKQSKIQMSDYLSKLVGQFVEYNGDDDTISSYVESDESGDMFKLTQERLEEIMSDNDSLSSLLNDSPEFNELGFSLTNAYGDSYSTAERDAYYNKTMDAIKDFFETQDLGYWGTKEGYTYDKEGKRIPRMKDIYFVNITNVIKQMIIDTVDNNMSDFDDYNAFENLGSFESVLREYYADEIRVNFDRVSPDYGDVDTLFNEYFRDNI*
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