NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114972_10025411

Scaffold Ga0114972_10025411


Overview

Basic Information
Taxon OID3300009187 Open in IMG/M
Scaffold IDGa0114972_10025411 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4201
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098562Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114972_100254112F098562N/AMNGERCAERPGSGMLLWQHEYYFVIEKYNGGPPRPYIYQAVEFRKGSELPVIEKENMSRKQLHATWVLGVAYAPALDVRKQSRREKGYLFHTDDSETDARTGLFWKCPEVVRVNNSTAWRAMSSVLAVVPRVVHPDDVYSGEVHVAGRDLHFVCGMCCHETVAKKTKTGKVKEGSFHLQRLIREEGGQQMKDGFCMYAEERLGKNINSAGMMWEMIEEVFQGIRKVMSESGRARSGSFRMTWCTSLQKFWEV*
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