NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114972_10110682

Scaffold Ga0114972_10110682


Overview

Basic Information
Taxon OID3300009187 Open in IMG/M
Scaffold IDGa0114972_10110682 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F031758Metagenome / Metatranscriptome181N
F043229Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0114972_101106821F043229N/AMTQKGVKLEIETTEECGCEPHECYCRHDREYKKSMKIRSLTTIIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQTINKLKIIHPDWEMDLKDSKNHYLCRCCSCLEKRRLYQQTLDEIRSEKSTPSKGSRDKFSN*
Ga0114972_101106822F031758N/AMSVNKSQEKELLIKNLFKLINEMFIVKPGVTFDEIVLQVRDTKKRILEIDPNWKLGNKYFHYVHEVISLIDEINTVEETNLETQRKTFRKILKTTKTMRQTDQLWRMNPTIILNFLKWNSKIIMSAEQISKKPKEQVPID*
Ga0114972_101106823F019779N/AMENCIEMKDPPVIDFRLVDIEGEEDRFSETLDSPNMENEMECSGERCFTPPEDDWEIISRGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIILYATTFINEANKTKVEKFRGFISDLLDFAKTNITKTLIIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRHTIRRRISRRYSI*
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