NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114954_1003222

Scaffold Ga0114954_1003222


Overview

Basic Information
Taxon OID3300009192 Open in IMG/M
Scaffold IDGa0114954_1003222 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Porto, Portugal - Porto_4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3677
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NamePortugal: Porto
CoordinatesLat. (o)41.162Long. (o)-8.622Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057077Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0114954_10032223F057077AGAAGMTGRLWRHGLAMMPHMIAGVGGPAESLPVPHADAAPTVVRAADGRSPRDQEEELEDGHGLGGAVLEAAEEVLPDPHAHDIASSDKYRRLYGTLPLHRAVLDVYCRMALLGGRLMGDNMADTTRMSEHQMRALVEEAQEFVVEYVDLLFGPAHTTKAHRLANHLLAALLGNGNLWEGDTSENEALHGPCKKMYARTNKRGPSVVLQMMRAAETQAEVLREMRELNSEEYDGGDGLRDLLDDDTEDGDVLGVPIAPLSRSHRGLRMSIATVEQMPGMERLGSLLGKGPDCSLVASSSFTFSCTFEWGAASEVQTACATDSYLGKPRYDHIWYADDGGRRCLGLVRLVVRKLDGMVDDFAVVRRLVETPSIPGCSLTWAGCKRMAWMFDGPNSEWPALARVPLTHVLRVEHVVADFQDLSDRHGLRAVPTNTPDTVAERHAQRFFTNKFYPFTSRVLNPGS*
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