NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115551_1331039

Scaffold Ga0115551_1331039


Overview

Basic Information
Taxon OID3300009193 Open in IMG/M
Scaffold IDGa0115551_1331039 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110321
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F046022Metagenome152N
F077805Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0115551_13310391F077805N/AKMFKVSYSIRVRQNVVPCEVTFATRKMAETFSGITYGSKIERVHTDGELFDLWSQGQIDVGAW*
Ga0115551_13310392F030251N/AMVMLVTDSFPPVKEVTFPALQREISLVKRTPFIGTPLWIIFERDGEAEPQQVARFTDFDLALECFDSLVEDAKNENQ*
Ga0115551_13310393F046022GAGGMKINRQILTARALQDIQTKTAAQRAVDPVDKTSKNLIWKQIFDAQLKGESDD*
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