Scaffold Ga0114983

Basic Information
Taxon OID	3300009194 Open in IMG/M
Scaffold ID	Ga0114983_1000138 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009194 Open in IMG/M

Scaffold ID

Ga0114983_1000138 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28675
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (44.90%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28675

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (44.90%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_10001383	F006262	N/A	LHRYPEDAFSRRVFTFTVAIKRSYLRAVYSALGGSTLLAALSAKSIAASSVIESGQIVRSTSSSDVSVEFAEPGKGGPTPSEMVEMWESLLNDYDLAVYYLGQDGISNPTDAQIYNKLMTVVLIAATSYGGDFSNFRREGTFRTGIT*
Ga0114983_100013838	F006107	N/A	MNGVAPRAEKALVDYLASGDWSGAGAGTPSFLTSYSRGLYDDPDEQDTMPNFPRVVVSSTSARPMQRTDLTCEVNMEVELQLSADDTDEADVLTTVAALDSLILPLFDANGASVLDADQDNASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATL*
Ga0114983_100013839	F005024	GAG	MRPVVNITVDSSRFDAALKQYLLATTRDLDKAVNARMFYLMVRLFVLVPPKSPASERARIADYLSKPLGDINRKSKKTGKRIGKSRLLRRVHLIAQARERKAGRRGLYGEEMKQAASAVYRKAIGSVGYLRSGVVKAIRVFNKGFSQYDKPKWKPLVKPAGYKAPKKPNAALVAIANQYGLPAENVAVHKGTRAKGFQAVPGWNPTASVLMQSGIADNQLGRVKSIYDSSMQKAYDDELAELSTHLTDALLANGQVLVDNGIDIK*
Ga0114983_100013840	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVADANTPVAGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDSGFVLLENTDRIALTFCKPRPVVGRTLMYQGRTLRILSCRVDASGAYYSLELGAKSK*
Ga0114983_100013845	F001272	N/A	MIKIELTQEQANSLLQLIDVAVKAGGVANARAALPLVDLILNAAQAKPE*
Ga0114983_10001385	F010611	N/A	MPLDSAEAADAWRQKNVRARARNTPPTASEQEDPAIEQEGPYRPEEAAQPVDTATAATDSPQGAYERQKEIERAAYDLAVQALRGRRADAARLVAIHATAAKNLTSSRDEVIAQAEKERRLVSGDWVRKVMQEHDGAVSSLLKAMPKQLSGRIAPHDPEHAERELSRWVQEVALKTLHNTDPWKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114983_1000138

Overview

Ecosystem & Geography

Associated Families

Sequences