Scaffold Ga0114983

Basic Information
Taxon OID	3300009194 Open in IMG/M
Scaffold ID	Ga0114983_1000191 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009194 Open in IMG/M

Scaffold ID

Ga0114983_1000191 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25479
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (38.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25479

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (38.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F024551	Metagenome	205	Y
F026860	Metagenome	196	Y
F074557	Metagenome / Metatranscriptome	119	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100019110	F082694	N/A	MGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNVLPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARVAAIAGSMQDLEAMQAVFTLQGDAHCYDITPMSEDEGVNERSWASVLVYDILVVVNPEG*
Ga0114983_100019117	F021297	N/A	MSDTVTLSQGNTFACTFVWTPGATGPANLLATTLTSTVEDKCGNSYELTITKAGDGLSFTCIYPGSTADWALGLGRWDIKFAFPGGGISRTEVFRVQVIDSVTL*
Ga0114983_100019131	F026860	N/A	MTDSNSIVQRLLKELSNEPKDYPCPKGWFTVDQIRVELDMAHTRNASSRALDLQRRGLLERQPHQFKSGTGQCHMAYVYRPVPPYKSIKEAAAQMFAHRSDKVPKGWVRLVDYAVSKNVSDVAVRGRVARAGLKPKYWKTPRGIIGLHLNAYYLKADLDRLYKA*
Ga0114983_100019132	F074557	AGG	MTLVLALSAALLTSEAIPEQTLQAVEQVESSGRGASTPRGDGGKALGCLQWHAVAWKDCSAIRRKVGLAVYPYADAAVPAKARDYARTWLTVLKVRLAGKIGRQPYPGEIWLAWNLGWSGYERYGFSWAYVPRVKFDKARQVNTLAWGLPKRPAVAR*
Ga0114983_100019136	F101160	GGA	MTTPYNSRSSGISELHDLIDKFVPVREAALQEHYQKAAQTRALLKSLGCWPTDKRKPVEPRGKKPKAGKLASELGREAYHWAHKNNATYTEAAERFRVDANSIHSYRQYRKLPKLRTK*
Ga0114983_100019141	F024551	N/A	MLIVKPDSLPRFWWLYPWSVARQLHRNCNALRALADKTDDENRLLRQEVTRLAHSRDHWLAKHDRAYAVAMHNERVIADMENRSR*
Ga0114983_10001918	F085382	N/A	MSLYGSTFNSDFQSILADIGVPATVGANLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPVTSLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114983_1000191

Overview

Ecosystem & Geography

Associated Families

Sequences