Scaffold Ga0114983

Basic Information
Taxon OID	3300009194 Open in IMG/M
Scaffold ID	Ga0114983_1000690 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009194 Open in IMG/M

Scaffold ID

Ga0114983_1000690 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14046
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (73.81%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

14046

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (73.81%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F002515	Metagenome / Metatranscriptome	552	Y
F002935	Metagenome	519	Y
F007263	Metagenome / Metatranscriptome	354	Y
F034573	Metagenome	174	Y
F045756	Metagenome	152	Y
F048982	Metagenome / Metatranscriptome	147	Y
F063707	Metagenome / Metatranscriptome	129	Y
F083720	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114983_100069016	F001507	N/A	MTTKYSPYTISELVNEIYEDNLSHFEFEENMGGEPCDCHLHITMNTIVKYWGE*
Ga0114983_100069017	F002935	AGGA	MRERTPGYMGNVLDGKKLAKIANDIYRVQYSNEFSECTVDDLLLIELEEKNVFGDPKYAVVCTEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVDTVKSCQTVFKKDISEYIRVFGDRLDSNCSLWQSKMSVAPSTILA*
Ga0114983_100069024	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPSKKVYSRKGKKSQSLMLELKKESE*
Ga0114983_10006903	F034573	AGGAG	MYRISRAVEKTKEEKVAEKIGVLLSDFHLDLEKVGVYMARSLPYLVFRRSLEVLESAQFQLDTVEQKRVEYNHDRLF*
Ga0114983_100069035	F007263	AGG	MSAVVDKTEFYEIIDEQHFCCDSSQFKYYCIEHSEFMGCYYCGFDYDKNCEEQH*
Ga0114983_100069036	F083720	N/A	VGKQYISKTLRGEIISARPHPKPIWYDGCDTYLVEVAPNSGWGAWRNTYRTIAVKVGE*
Ga0114983_100069040	F045756	AGGAG	MTKYNVTVSYVCEADSDIAAIFALNRSLYPLNEVELEKFNAVKVEEVSE*
Ga0114983_100069042	F048982	GAGG	MISIKLQDVLATCRQIRGNDHDSGTHYLLGYLWASMSDKEKQRIATLFTNDLLEQEKSK*
Ga0114983_10006908	F063707	AGG	MPKCLDCNNTTRFWYVEVSHKLGMYTEDGTMEDVEDDYYDEVTDGECAECESKNIEGPL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114983_1000690

Overview

Ecosystem & Geography

Associated Families

Sequences