Basic Information | |
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Taxon OID | 3300009194 Open in IMG/M |
Scaffold ID | Ga0114983_1001135 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10739 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001733 | Metagenome / Metatranscriptome | 644 | Y |
F031872 | Metagenome / Metatranscriptome | 181 | N |
F033435 | Metagenome / Metatranscriptome | 177 | N |
F039641 | Metagenome / Metatranscriptome | 163 | N |
F050378 | Metagenome / Metatranscriptome | 145 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114983_100113510 | F031872 | GGA | MVESLVVDEWIYDTLTADATLQGLLAVDNRAPSYQQGIYLYYAPEKDPISLRQPQVPYIVVRHLDAGQTDTTSVCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVDTTTPVFFLNRASVSSSIDVSQDGRVDNGISQVYVATITP* |
Ga0114983_100113512 | F033435 | AGGA | LSSIFDNIPKLEGRPNHTVDIERFIGAPGSFTFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQPGDGEINPARRFAQLARDRSDIYLFVVGQFAAAFPINIEEAVDEVPND* |
Ga0114983_10011352 | F039641 | N/A | MIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWVQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYVSGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG* |
Ga0114983_10011353 | F050378 | GAGG | MSPEMWVQIGIQAFITIMSIGAAWVALQVRLTRLETQVAHIISTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR* |
Ga0114983_10011354 | F001733 | GGAGG | MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDISELGAVLALYGSKAVAAGVTAAMSSVLAFLTMPFKGVEANSLKVGK* |
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