NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114983_1002475

Scaffold Ga0114983_1002475


Overview

Basic Information
Taxon OID3300009194 Open in IMG/M
Scaffold IDGa0114983_1002475 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6876
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008243Metagenome / Metatranscriptome336Y
F017302Metagenome / Metatranscriptome241Y
F034930Metagenome / Metatranscriptome173Y
F062753Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0114983_100247516F034930AGGAMKNFTVKENQAFRLRVKSWKCLSPSDLNSVEFIQESLKDGDVIETSTYNFFMTDEEMKTLAQGLVA*
Ga0114983_10024752F008243GGAGGMHPLEQEIQTISEQCQMGNISLDERNYLLQEIRDIRAAQECAGNEVAFRYIVQACNIAMAVV*
Ga0114983_10024753F062753AGGMKHVLLIAVIALSGCSTIKEYWPRPHDPVMFNQLVAVDVAIEKQNCEKPTWEEVHPVAEQLARYSEWRSDPQATNLRGLEKHVERMAKGGSKTFCEIGKKTAKQRINAAKTAWEGR*
Ga0114983_10024755F017302AGGMKIALIIASVLLVGCATNPEVQKSVSKDQTMDKLAKAALINDMLNSPDAHVRAKGAAIAEKFLIEPKKNIFGF*

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