Basic Information | |
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Taxon OID | 3300009194 Open in IMG/M |
Scaffold ID | Ga0114983_1025159 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 RT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1537 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003807 | Metagenome | 467 | Y |
F040626 | Metagenome | 161 | Y |
F058146 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114983_10251592 | F003807 | AGG | MNENDVWLKTTEEKLRSLIADEAKMMPMLDNMQATIKQLKAKQTFRLALLNQLLEDTSDSE* |
Ga0114983_10251593 | F058146 | AGGA | MKLSQLTAKPQLIDIHIDDEDTIKEFGEPIEFWTWDRQPMDVFMRLANADHTNTGNIIEIVRTLILDEKGKEILTKDNALPTHVLMKAIAKVTDLLGK* |
Ga0114983_10251594 | F040626 | N/A | MASVLWIDTLGKRYGMLPSEVIGRANTFDLYIMDMALAFENYHHKKSMNGGKDPIPDYTTDELLAMVAKGKDQIDG* |
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