Scaffold Ga0103857_10025810

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103857_10025810

Scaffold Ga0103857_10025810

Overview

Basic Information
Taxon OID	3300009235 Open in IMG/M
Scaffold ID	Ga0103857_10025810 Open in IMG/M
Source Dataset Name	Microbial communities of water from Amazon river, Brazil - RCM10
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1040
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon river
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058726	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103857_100258102	F058726	N/A	TPRGIAGFALPVVGTDKSAEAPPGVHSALELFHEDVAVPGTTLTGFNGLPERSGRRSGDIGSPLPPRRLDDREVFRRPACRAIRRPPGNSHRLRRPPRVRARVPSPVLPDRVAPHRVSRPFSDFSGGIRITRAIHGPAPSVLGVSHPLDGLLSLRPCGHARSAAAHGVLAHLTLSSGEAETRRRASCTPSSTVLYSLEL*

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