NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103858_10002012

Scaffold Ga0103858_10002012


Overview

Basic Information
Taxon OID3300009239 Open in IMG/M
Scaffold IDGa0103858_10002012 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM11
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3799
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0103858_100020121F001219N/AFVAETILFIILALVVTFVFLKPISKQLDDRAEFINYTLRKSTILLTFGYEKLSECVGLLTEEVSEMNRQLKLTRNYTNSNFEEEVLSVQKQNSKLLSKLKGDLSIKSAYLFSNVTRELISLTDNFFAKKFQS*
Ga0103858_100020122F001145N/AMTWNFFSFLLTHEETEAFIQFNSNILETNLVNILILIGLLVYGNKVSFSVSLENRQKEIIQTIENAQKDVANASNYYYLAEKGFTQSLFWLQSWKMLYEKEKIDLVESKYKLVKTGLTETFATTETLIKNFENKSFIALQRYMILVTASKILRKFLYLSEDEQSKLIEVTISKLGGSKK*
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