NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0103858_10020476

Scaffold Ga0103858_10020476


Overview

Basic Information
Taxon OID3300009239 Open in IMG/M
Scaffold IDGa0103858_10020476 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM11
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1458
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0103858_100204761F000671GAGGMEKIICYSCSKQKHKLEVKKSSILPINLFMCETCINSKFEPRWVVILAGRSNGPDYVKEIIAKQR
Ga0103858_100204763F000473AGGAMASDKDHFRYGINQWTGEPNKPVFYTDEMKKRIWEIPKPAMLLLDIVKYPEFLALRLYEDNFIQFDGTKKEMVIDYVSKVKKLIESYGVRCELEGVPSARVL*
Ga0103858_100204765F013878AGGMLNLTELGVEVFIKKSQAASLSSFWDNYDLIIWQKDSSGYSDKKGMFLKNLWGKAERISVSDQGIWKLPKRYVRYFK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.