Scaffold Ga0103680_10002848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103680_10002848

Scaffold Ga0103680_10002848

Overview

Basic Information
Taxon OID	3300009285 Open in IMG/M
Scaffold ID	Ga0103680_10002848 Open in IMG/M
Source Dataset Name	Microbial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Lawrence Berkeley National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15831
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (71.88%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Microbial Communities From Groundwater In Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, CO, USA
Coordinates	Lat. (^o)	39.32	Long. (^o)	-107.46	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037704	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103680_1000284821	F037704	AGAAGG	MSSVRERVKAAQKELRDGGDLLPTRAAQLLMELTALLGNCLEEIREADHAYAVVLLGALETSEKANRAKIWAETSVEYQRKREARDTRELVQELVASLKYYLRSLEAEMRLSH*

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