NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103680_10115149

Scaffold Ga0103680_10115149


Overview

Basic Information
Taxon OID3300009285 Open in IMG/M
Scaffold IDGa0103680_10115149 Open in IMG/M
Source Dataset NameMicrobial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterLawrence Berkeley National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Microbial Communities From Groundwater In Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, CO, USA
CoordinatesLat. (o)39.32Long. (o)-107.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043672Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0103680_101151491F043672AGGMSGTIKEPEQLAVTMIGTSSFGSQTGGIGSIMGSSWSEKIVFDAQPNRVISKYFLEFTDLIGNNDVTIVIPKIGDVSLMGGRGTGATINKEGVARVMTLFSTANNITVSLTSADVKLGGAEISFETASATRVSIIEMAHKQLVRQYLNTIETDAANTLDQATVNATTGAGTVYGGSNVADNTAVATGKGSLATGDVIDVDKIVDMKIRLQSVNFAKLPGEAVIFLHPTQYKLLLKSSQFTNAAEYGAPSVVRKGVIEEYIGVIIEVTTQVYAGTVASDATYANHGVWGVAGHFAYMIDPTAAAGIVWKEKARVKVVTQDDERTHKVLLDAWYKMTRINGLAIVIGLFTDA*
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