NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103826_108742

Scaffold Ga0103826_108742


Overview

Basic Information
Taxon OID3300009338 Open in IMG/M
Scaffold IDGa0103826_108742 Open in IMG/M
Source Dataset NameMicrobial communities of water from the North Atlantic ocean - ACM29
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)706
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031118Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0103826_1087421F031118N/AVVTQARCEALAEILAEAEKLKMYRLDGATYCEKCDNLVVRIQSVLADVNVEDLSADEIEIIKSIKEKVISEEVFAQSSSILRNPKEWLGTLNE*
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