NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103827_1012367

Scaffold Ga0103827_1012367


Overview

Basic Information
Taxon OID3300009357 Open in IMG/M
Scaffold IDGa0103827_1012367 Open in IMG/M
Source Dataset NameMicrobial communities of water from the North Atlantic ocean - ACM13
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)542
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025041Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0103827_10123671F025041N/AGLKTTLGLVTPAVTVTVDATASTSFALSQPSGKAPSLKATLTLDSFSQRDVVFLIGEISSDDVNRDIEAILTSLLDTINADIPALPILSLPGVHYENPEFIVDNHVLLVKADFSRASVAPVIMV*
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