NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118716_1141144

Scaffold Ga0118716_1141144


Overview

Basic Information
Taxon OID3300009370 Open in IMG/M
Scaffold IDGa0118716_1141144 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0127930, Gp0127931
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1204
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017223Metagenome242Y
F033597Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0118716_11411441F033597N/AFDGFLQYLNGEAPDSIQTLLANAEPDTIFDRMKASEQRKIARVATELAALNESFKGYIAQSANPQFKYV*
Ga0118716_11411442F017223GAGLKWIKEISGVSDADVIKELKEHVPDIETVDTELEVKKYTTETLPKDSINLSDSTQLDFYKGNDVLRTALQTIKNRRLDTAVNRPDSLYLSFVDRVHKNRLIVPFVNENNDIEFYQSRTLLNRDKKTKPKYLGRVNAEKTLFNIDKVSSDHENVYIFEGPLNAFFTKNSVAVAGITERGRSLTSRQQQQVDSALKWYNPVWILDSQWVDQASLVKSETLLQQGERVFLWPEKFGKKFKDFNDIAITCKVDEIKWDFIQKNTFEGLEGIVRLSEIKKYKNYTYLN*

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