NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0118722_1238400

Scaffold Ga0118722_1238400


Overview

Basic Information
Taxon OID3300009376 Open in IMG/M
Scaffold IDGa0118722_1238400 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0137079, Gp0137080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1073
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y
F053334Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0118722_12384002F053334AGGAGMAKKKKVPFHIQNNYKQYSYEDGGLKITFWAKDDDDAKLYRKKVEGK*
Ga0118722_12384004F003091AGGAGMLPRKPITKPGEGKQRQKYFSQERYLEERYQISDALKGPKRLEDESFEDFHIRRKAENGLLKEYLRGVWIKKED*
Ga0118722_12384005F012582GAGGLDKERRLTKFHKKLRHLSTTMIQWAEENKIRTKRNGNYEIPQRNGVDWKEDFKFVQKLDSMLADGLDDKLKKKEMKMCNELYKYYGSCYDRLRK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.