NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116854_1008955

Scaffold Ga0116854_1008955


Overview

Basic Information
Taxon OID3300009400 Open in IMG/M
Scaffold IDGa0116854_1008955 Open in IMG/M
Source Dataset NameSoil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Community Of The Robinson Ridge, Antarctica

Source Dataset Sampling Location
Location NameRobinson Ridge, Antarctica
CoordinatesLat. (o)-66.369451Long. (o)110.585574Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095037Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0116854_10089551F095037N/ARQGLAVHGGDVVEWFVRVGEGVVVNDFTILKDNEVAEIVEMLPGRIYATDMFKAWEGVFFSEEQCIYLGVWHDNVRNLRSDGQTGLAILGLWYVLCYWLQKAHYPDDMQDIPPSELAWNYIRQTEKWVAPNLLRNTCRQADVLTTINHQAADALFLAPPARKAFRTADARIWMWEAWWQGNSYFNIEHYYRDSLFGARSADENGYARAVASVLSSAQQYPVIVMQTTEQKMHEFEGLLRNARKNVEILAPHPYEVYLVGTS*
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Institute for Fundamental Biomedical Research
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