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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009410 Open in IMG/M |
| Scaffold ID | Ga0114955_1007168 Open in IMG/M |
| Source Dataset Name | Marine algal microbial communities from Porto, Portugal - Porto_5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4535 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Portugal: Porto | |||||||
| Coordinates | Lat. (o) | 41.162 | Long. (o) | -8.622 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013163 | Metagenome | 273 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114955_10071682 | F013163 | GGA | VYNTAQRSYQQLSTYVAGNYRAAKDKMAHANRRSPGGPSRNGQTSTRLRGLSVNHLNSPWEEDDTDTHDMVAVLPSGTPGFFMVGAAPYPRREATTGPPLCYMCWTRGHRVPDCKILTEKQREIVKAARSTFLRQRNGTAVAAPDRTTAVALLWDDLLGGAESPKTEGGDVPPVATPSKGRRGAGNA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |