Scaffold Ga0114903_1031600

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114903_1031600

Scaffold Ga0114903_1031600

Overview

Basic Information
Taxon OID	3300009412 Open in IMG/M
Scaffold ID	Ga0114903_1031600 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1307
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	4.36	Alt. (m)		Depth (m)	1304
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048920	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114903_10316001	F048920	N/A	PDHELVEELAQAKAEADAAKEKYERLRFEVQQRIQEKPGRVVIFGETHEAELEEVWGTDGRYDQTRLIQFRERADQNTAELLYGDAWIAEELKVIPGHWNMTKLKSLARKHGDLEEVEAAKLEPNHRVKLVKRK*

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