Scaffold Ga0114902_1021831

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114902_1021831

Scaffold Ga0114902_1021831

Overview

Basic Information
Taxon OID	3300009413 Open in IMG/M
Scaffold ID	Ga0114902_1021831 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2054
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)		Depth (m)	2851
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005580	Metagenome	396	Y
F010737	Metagenome	300	N
F017935	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10218311	F017935	GGA	MTDATFTAIWILSFGLYLLIYTYWIPLRTQEKIESWLRSEESDETLLMSLEVITKRIREQMLIDFEEFM
Ga0114902_10218315	F010737	N/A	MSVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGAQRISRIDVAMDAPDTKGVVLACRLLGSNMSEQNLTLAGSCGDVADAGGTAQFNMVPTNFPVVGVNNIDLQVAFQFTTGTPTASSLSVTLYFE*
Ga0114902_10218316	F005580	N/A	GMASGLAIAAYLNQGRETTGRTNGFPTTTTIEGVIKDVTDGQLGTAFSTLSHNAINMIASDGGRKTLVPASGIAILGAFARKQFPNLKLGGSKLYFRI*

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