NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115029_1002273

Scaffold Ga0115029_1002273


Overview

Basic Information
Taxon OID3300009415 Open in IMG/M
Scaffold IDGa0115029_1002273 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11658
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036067Metagenome170Y
F036534Metagenome169Y
F051654Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0115029_10022732F036067N/AVYKPGASHHLPDFLSRASTVAPPEDIHDDITCLVLAETAKGLRTGRYTGTDTPEPVEFDDVVEAQQTGDTCVEMSTRVERGAAKAFFRNEHHALYRRTPYGNQLDIPKS*
Ga0115029_10022736F051654N/AMACAEELTTLPRIQDANNNLLVTKYAIYLYVDTGGVRLFDQFLVFDNLSVPCILGTEFIDHNIEAILPLLRKIVWQEHVRCTEELPRPTPILDCVNDSASDRHWQGKPARVRACKQVHADGQQEEWMMATCDTPGMVTITPNARLCRHKSMAVARGLAIVKPDESFLVKLFNFGKDQVIFRKNSMWGLRNLSKGLCWPPS*
Ga0115029_10022739F036534AGAAGMDGYAAGMGGIKIDTMTETNFHEWRQRIKMVLALRDLDDKLDEAGKLADAEDRELASWKRRNTKASAIIGLTHESEQL*
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