NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115029_1003232

Scaffold Ga0115029_1003232


Overview

Basic Information
Taxon OID3300009415 Open in IMG/M
Scaffold IDGa0115029_1003232 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9010
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006930Metagenome361Y
F027092Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0115029_10032321F006930GGAVTLMVPHMVHSQDVVKLHTFVLGDLGALLLACFGFDLRFALVAFDLVSDSI
Ga0115029_100323216F027092N/ALYETNCALDYDFALCFAVLLSSRYEKVELWVDIRGSSFDGQS*
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