NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115029_1106183

Scaffold Ga0115029_1106183


Overview

Basic Information
Taxon OID3300009415 Open in IMG/M
Scaffold IDGa0115029_1106183 Open in IMG/M
Source Dataset NameMarine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location NameSidmouth, United Kingdom
CoordinatesLat. (o)50.677Long. (o)-3.24Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036534Metagenome169Y
F039926Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0115029_11061831F039926N/AWSVTLMVPHMMHLQDVVKLHTFVLGHLGALLLACFGFDLRFALVAFDLVSDSTWCEGVGVGVGVRGGSTWAGGDYLRGALGWERRANLRTTNKARSHTHTHAQATQTLHRGAPTPISTAFQQVMGPEAGL*
Ga0115029_11061832F036534AGAAGMDGGAVGMGGIKIDKLTETNFHEWRQRMKMVLALRDLDDMLDEDGAPTDAETRELAVWKRRDTKASAIIGLTLGSEQLEHVSGCKT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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