Scaffold Ga0114953_1012638

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114953_1012638

Scaffold Ga0114953_1012638

Overview

Basic Information
Taxon OID	3300009417 Open in IMG/M
Scaffold ID	Ga0114953_1012638 Open in IMG/M
Source Dataset Name	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4881
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location
Location Name	Sidmouth, United Kingdom
Coordinates	Lat. (^o)	50.677	Long. (^o)	-3.24	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013163	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114953_10126385	F013163	AGCAG	VAGKYRAAEDVMALANRGSPGGCSRKGQTSTGPRGLSVNHVGSPWKEDDTETHDMVAVLPSGTPGFRTGGEAPYPRREATTVRPLCYMCWTRGHRVPDYQILTDKQRDIVKTARSTFLRQRNAGVGTTLHHTTVVALLRDELLGGAEETKTEGGGVPPVAAPSKGRRGAENA*

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