Scaffold Ga0114908_1028257

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114908_1028257

Scaffold Ga0114908_1028257

Overview

Basic Information
Taxon OID	3300009418 Open in IMG/M
Scaffold ID	Ga0114908_1028257 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2136
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.31	Alt. (m)		Depth (m)	2520
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012859	Metagenome	276	Y
F038853	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10282572	F038853	AGG	MTKDKFHFGATSVMREVPPGQTAVIKFNGKLEEIDTEWGAKMKYPILLFSHPSYESISKEGIETVWQSNSQASRDLATALEQGIKELSKAFHENKWELTRTEEGTYFLDVIL*
Ga0114908_10282575	F012859	AGGA	MVRNRKGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGDWKGAKSNDKDFIALQTDLGIANTANFLTPSESADGTWPLDMTGFCGLFIAIKPSSGGNYKIEAVMGPDNLSFANLSPVNPAAVLKGTRGDSGNDFDSLFSDSAESMTADVWNIFSIMSCGLRDQKLLQFKITNNSGGSSNIDTAFMRLV*

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