Scaffold Ga0114982_1000260

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114982_1000260

Scaffold Ga0114982_1000260

Overview

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1000260 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	28845
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (54.76%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)		Depth (m)	2500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013888	Metagenome / Metatranscriptome	267	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100026019	F013888	AGGTGG	MATIGILPASGRASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEIRVSTKAEWVPIIKNMDMNIKLIVKEPSTMSDAINFMVGEYNDTVIVGMPDTYVLDAPGNIYKEMLKETNADLVLGVWECNDELKGRVGQVLLSEDKVIASEDKSDNCDYLDMWGIMMFRKNMIRYLDSSLEHPGKQIKDWISEGKNIRAVRPGGKYMDIGTLKGLKNLYKEMDLK*
Ga0114982_100026040	F095473	GAG	MNTNTCKVINCDSTELVYSGTDAFMLGINTETYCYKCANAYAQIDRVMSKVRQDYLDSLTPPSTLTTSD*

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