NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1001334

Scaffold Ga0114982_1001334


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1001334 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12016
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028738Metagenome / Metatranscriptome190N
F036603Metagenome169N
F042894Metagenome157N
F043355Metagenome / Metatranscriptome156N
F068577Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0114982_10013341F036603N/AACAVAFISDYILSSFQDTNAMVMLITDAGTKSDDARLEGQLTLATLGLKACRDLGWALAVGCVGVGVAVFLRFRRQNAS*
Ga0114982_100133413F028738N/AVTSTTSKLGACQPINVILADSTIVLMWIVKTEAVRQFSISDMKQAEVELADFDAVILSKQSRHIPEMAGATFEKDGNAYIIDAVSQSVADKINKKSVYLTPIWLSARSFFPR*
Ga0114982_100133417F043355N/AMENQNDRPPLTTLNASGKYVLKMSLPKEDKVKVYDDGVSARLFFKTAEGQCFSKSYGTKYGKSLAMLVGKISGKFVSEPKADLSVPAFLDYLRPATGIYFEVEVEVTPDGEWQGKPQFKYKLNFPKGKGSAASTIPTPTDW*
Ga0114982_100133424F068577N/AMSRRQPDPLLVKVMAAIHQTAETPPKGFRTINGWAKVWNMERTAARITIHKGMKLGLIEKRIYRVVLRRDAKPYPTAHYGEKAGRRRT*
Ga0114982_10013345F042894N/AMPDPMSHVPDMLASPAHVIRGLSYQIAYARDRVLQGDWTEKFARERIQLCAAVAEDNLRMSHGCKAVTIYANLTTGCRALFTWSFVDRNGEKDAGSVHPTMDGR*
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