NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114982_1006035

Scaffold Ga0114982_1006035


Overview

Basic Information
Taxon OID3300009419 Open in IMG/M
Scaffold IDGa0114982_1006035 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4595
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F035307Metagenome172Y
F056615Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0114982_10060355F000258GGAGGMTIDYKADVMLDLRKFLWSQLKDNDIFVETDYYSDNLGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGMSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDESARDTNAYSGISKKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHVGTNGRFL*
Ga0114982_10060356F035307N/AMSGTSGTILKDSTVAQISAAVYYHAQVVAKLTTSKAFEKKFQSVIFKQIEQDFGLYVDSQARMNPKSLHHVYEWNKVGNKGARLFNLSILSTDGLSFKITSSFLPSKSAVPNEFAKRKHVFINKASVMEAGMPLTIRPRSAERLVFETSTGVVYMPKGASVTVTRPGGGKATGRFQIAYAQFFTGNLVNSAIKKSGFQQIFNSSLTKAMRVPADVRKVKYSFSPNTLRMQADSAVEAAFGGAV*
Ga0114982_10060357F056615N/AMYDLVDSIMPMLMDVYKPFDSQDPDTGSIKKEWQFDRTVPCSVKGIISNSSSSRAGDKQIISNKYTNEQMLQVRTAEKITLREKITNIRDLEGNVIWEELNFPTNTPTVYELMGTTPMTDPFGGVVAYNSTVKRSENQTIGQ*
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