Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1006349 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1006349 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4440
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4440

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (63.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002935	Metagenome	519	Y
F003422	Metagenome / Metatranscriptome	487	Y
F020171	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100634910	F020171	AGGAGG	MSEQFIDTIAEHITGAIQQEISEHLFDQWSAKNCDEGPDYAEHMFMQFASDDLKQQYNEYYGYIEGDEFLL*
Ga0114982_10063493	F002935	GAGG	MSERTKGYVGTIVDGKKLAVIANGIYNLQYSSDFSECTVDSLLFVELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDIADYIRVFGSRLDSNCSLWQSKMSVGAGTIAL*
Ga0114982_10063494	F003422	N/A	MTNELVSTKYTFACDPEACDVLIELTSSDGFGFPSGVMEITCPCGRKPVLLSVVNATIAPITQTKEEKMEYYPETETIGSDALHSTAVPYNPDLLVTYKVIRGYSDPEYTTSKVASLEWDLHNGRQSQKTVGMLQSNINTVKDIITEAYGDSDDQETLRAIAEALSIPLTRTVEWTASIEVSGTIELDLLSDYDTDLESEITDNLFADSHNGNIEVIDQEVCHVREC*
Ga0114982_10063495	F000311	GGA	MYFELTAPDRLSMEMAYWDAQIIGLDPEAMSPLTFNIGTGSIEKVSRIRDKYNLIESYWSEKEATGY*
Ga0114982_10063496	F001043	AGGAG	MSDYKDGFDDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGNL*
Ga0114982_10063498	F001125	GGCGG	MGDRANFGFKQNDGNTLYLYGHWAGHNMLAKLANAVQAAEPRWQDPSYATRIAISNLVGDEWPQTTGWGLSINRILDNEHKIPVINWDTQTFTLFEEDLITEVFSLSLANFVDKYSRLVMV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1006349

Overview

Ecosystem & Geography

Associated Families

Sequences