Scaffold Ga0114994_10007160

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114994_10007160

Scaffold Ga0114994_10007160

Overview

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10007160 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8042
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071292	Metagenome / Metatranscriptome	122	N
F085783	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000716010	F085783	N/A	MGWFKLNKTLRKELKRKTEEADNIRKEWFKQRKQISDLVRELELARKMWDVSDKTKRY*
Ga0114994_1000716013	F071292	N/A	MKVYIIIAFNKADFYPVGVCDNLIIAKQYAQREFKERAKSHRIYVYEKTMNAPQLMEDKIVYKL*

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