NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10029461

Scaffold Ga0114994_10029461


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10029461 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3836
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011529Metagenome / Metatranscriptome290Y
F040871Metagenome / Metatranscriptome161Y
F076496Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100294613F076496GGAGGMAGHKYSKEIQDFLDAGGVIKVIPPEDTAKTLEKQSNGYFKGRPVMGPTKKKEESE*
Ga0114994_100294614F011529GGAGMNWIKKSKRKTTDNLEGIRLRSCQLWLDATGFHPFLDPDTMKLPDLEKGFGCTYAELPKEAWDTMDRYDEVVARRSVYAT*
Ga0114994_100294618F040871AGGAMSTTERLELLEVKLQQIGMMGQWYQRYDISTGAQECKVIVKELKAALDPPCGMSRK*

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