NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_10056481

Scaffold Ga0114994_10056481


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_10056481 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2700
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024225Metagenome207Y
F036475Metagenome170N
F071255Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_100564812F071255AGGMSDNNNDESYMELDELSGKLKDGLSEEFSSIKGSINELADKMNLTQKEKDGMTSVSEFVEHLDNCDNENCEIHKSINTKQNNFYMKGFLLGAKFGKQKRN*
Ga0114994_100564813F024225AGGAGMMINFTTETIDRKLYEKSILTYIYDHYLYNDYRRLVEQDKWEINVRTLKDFNWNFYDKNIKNLSKKMPHGVTGNYTVDCYVSDETNRMYYLQNMMVICHELSHMLLKIYYPDTKGTLEKDDTYGKAGSVRNFFSTEIHNRVEQGKTRKFTTWHEREYYFYGIDIDDLTNKRNLNNNI*
Ga0114994_100564815F036475AGGAMTPLQKLTLEILNDCMSIVERKVTNPIYKKVIISMGYPYARNEILKTNDEELKRDMNLVYNRLKKHFDKKQLKDEIDFSNNISDIKVPDFITKQVGDYF*
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