Scaffold Ga0114994_10204440

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114994_10204440

Scaffold Ga0114994_10204440

Overview

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10204440 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1328
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F031926	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_102044402	F031926	AGG	VGKDATTFQNGIPNQTVLVFKTICCLPDEEINTRVIAEWYYKLFGVAISTTSTHRNMSRLADYGFLDMVDNPHGKSHKYTWIKLTQSGRKLQKLFIGSSSDWKDKPRTVVERNVKHAMSGGIYD*
Ga0114994_102044403	F024137	AGG	MSVAELVCRVWKTVRHKYNGVSDFDYHITDLRCQYPNNIVYNSAVGVLPFYCKTNEVDDVYEKVSSIKFGDCNIRYQFDKLVKQTDSSDSENVDYLFGDPRIPMIRDLITQTQVRHNEPKSLRVLNFTKEGKNVVKLHNK*

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